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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1743009_1921996_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1743009 - 1921996
Intron Length:
178988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACCT
Flanking Amino Acid:
APSSLGTGYFCDSDSDQEEK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76.2
32.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
79.4
1
1.5
95.32
31.5

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038867
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000044887
1508359 - 2025780
517422