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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1743009_1929950_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1743009 - 1929950
Intron Length:
186942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACCT
Flanking Amino Acid:
RSSSRERLSDCDSDSDQEEK
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
79.4
1
1.5
95.32
31.5

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031576
1508359 - 2025780
517422