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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_186769_187273_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
186769 - 187273
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AGCTACTGAAAT
Flanking Amino Acid:
ALRLFVNGEVVSAQGYEYDN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
49.8
0.07
1.8
66.98
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006567
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006881
182778 - 192659
9882