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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_187317_188290_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187317 - 188290
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
AAGCCCTTAATC
Flanking Amino Acid:
SGLVGSEFEMTLPGALRLFV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
85.6
0.8
0.8
80
32.2
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
68.9
0.57
1.2
67.75
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006567
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006881
182778 - 192659
9882