About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_189835_190152_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
189835 - 190152
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTTCTTGATG
Flanking Amino Acid:
YVMGDLGPYGKLGQREYERV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.9
0.49
0.9
71.6
34.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
70.1
0.49
1.3
70.56
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006567
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006881
182778 - 192659
9882