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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_191821_192402_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
191821 - 192402
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGGTGCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGTTTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
66.5
0.37
1
61.8
44.4
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
58.5
0.35
1.7
75.92
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006567
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006881
182778 - 192659
9882
Gene:
Ensembl Gene ID:
ENSAPLG00000030630
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045076
191641 - 192812
1172