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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_218809_218900_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
218809 - 218900
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GGCCCTTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAA
U12 Branch Point Sequence:
AAAATGGTAACT
Flanking Amino Acid:
LAVRELMDGSAAEVKMEMGW
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
53.4
0.08
1
50.7
34.3
Major PPT
68
0.4
1
64.6
41.3
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
42.2
-0.5
2.5
60.76
42.6

Associated Gene:

Gene:
TBL2
Ensembl Gene ID:
ENSAPLG00000007064
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044510
216513 - 220896
4384