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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_223413_223634_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
223413 - 223634
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
GCTGCCTCAGCC
Flanking Amino Acid:
STLSTQPSIKVSKATTLQKT
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
79.5
0.66
0.8
73.5
31.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
48.6
-0.1
1.9
59.35
45.4

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043