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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_224053_224769_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
224053 - 224769
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTCCCTAAGC
Flanking Amino Acid:
VERLSPTSSCGSDWPKPRQA
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.1
43.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.8
0.78
0.9
77.9
40.2
Minor 5ss
32.9
-2
3
42.1
44.4
Minor BPS
61.6
0.34
2
75.12
41.7

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043