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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_225447_226315_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
225447 - 226315
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACCCTTCTAATC
Flanking Amino Acid:
NPCLTQLLTTAKQEPALDTS
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.3
0.61
0.8
73.6
29.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
46.2
-0.3
1.6
49.69
35.1

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043