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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_231864_232510_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
231864 - 232510
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TCTGCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
AGTGCCCTAATG
Flanking Amino Acid:
PSTHQALPEDAYIGNADMIQ
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
82
0.72
0.8
73.1
37.3
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
52.4
-0
1.9
59.34
42.5

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043