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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_232710_233008_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
232710 - 233008
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
REGELSSPKQDEDAWRPTEK
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
66.3
0.37
0.9
58
37.3
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043