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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_233054_233799_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
233054 - 233799
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCTGCCCGCACC
Flanking Amino Acid:
HKWRIYYKKRLRKSSREGEL
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
44.3
-0.4
2.2
59.63
45.3

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043