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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_234539_242214_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
234539 - 242214
Intron Length:
7676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CCTGGCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
GTTCCCTTCAGC
Flanking Amino Acid:
RLFECMSLEYSGKLVSPKWK
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
66.9
0.38
0.9
62.5
38.5
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
54
0.11
2.1
68.72
42.7

Associated Gene:

Gene:
MLXIPL
Ensembl Gene ID:
ENSAPLG00000007145
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007428
222468 - 242510
20043