Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2571897_2572687_R

Intron Information:

Intron Rank:

150552

Intron Class:

major

Intron Phase:

Intron Coordinates:

2571897 - 2572687

Intron Length:

791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAATAA

5'SS Class:

major

3'SS Sequence:

GTCTTTTGTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAC

U12 Branch Point Sequence:

CAGCACTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

31.3

Major BPS

65.2

0.38

57.3

39.1

Major PPT

81.3

0.7

0.9

80.2

37.3

Minor 5ss

42.7

-0.8

55.5

48.7

Minor BPS

47.6

-0.1

1.9

54.93

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028489

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037428

2571551 - 2573558

2008