Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2592689_2610016_R

Intron Information:

Intron Rank:

145686

Intron Class:

major

Intron Phase:

Intron Coordinates:

2592689 - 2610016

Intron Length:

17328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTCATGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCTTCTTCATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.7

0.62

0.8

Minor 5ss

29.1

-2.4

3.2

37.3

42.5

Minor BPS

59.3

0.15

1.8

66.07

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044092

2591466 - 2610132

18667