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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2655760_2656833_R

Intron Information:

Intron Rank:
155557
Intron Class:
major
Intron Phase:
Intron Coordinates:
2655760 - 2656833
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTGGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.5
0.51
1
73.1
37.2
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
61.5
0.44
1.8
80.49
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031193
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018467
2655007 - 2659795
4789