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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2656910_2659610_R

Intron Information:

Intron Rank:
155558
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2656910 - 2659610
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CAACTGTTGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TACATTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.1
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
50
0
1.2
48.2
43.6
Minor 5ss
46.4
-0.4
3.1
63.6
48.1
Minor BPS
54.8
0.23
1.6
69.56
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031193
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018467
2655007 - 2659795
4789