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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2682615_2682843_R

Intron Information:

Intron Rank:
145501
Intron Class:
major
Intron Phase:
Intron Coordinates:
2682615 - 2682843
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
ATCTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTTTCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
63.6
42.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.7
0.71
0.7
77.7
30.3
Minor 5ss
39
-1.2
3.3
55.1
43.5
Minor BPS
50
-0
2
65.51
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025677
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023584
2682415 - 2685149
2735