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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2684771_2685094_R

Intron Information:

Intron Rank:
145503
Intron Class:
major
Intron Phase:
Intron Coordinates:
2684771 - 2685094
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCACCCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTACATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
67
0.38
1
60.7
34.9
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
52.3
0.15
1.9
75.54
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025677
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044864
2684046 - 2686672
2627