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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2689961_2690781_R

Intron Information:

Intron Rank:
131477
Intron Class:
major
Intron Phase:
Intron Coordinates:
2689961 - 2690781
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TAAAACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.14
0.7
85.2
29.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
93
0.97
0.7
88.8
27.4
Minor 5ss
31.1
-2.2
3.8
44.6
43.4
Minor BPS
48.9
-0
1.8
67.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017947
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022812
2687347 - 2690843
3497