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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2689961_2700436_R

Intron Information:

Intron Rank:
131479
Intron Class:
major
Intron Phase:
Intron Coordinates:
2689961 - 2700436
Intron Length:
10476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TAAAACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
93
0.97
0.7
88.8
27.4
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
48.9
-0
1.8
67.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017947
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030928
2687347 - 2700746
13400