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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_27294_27484_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27294 - 27484
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGTGTGGG
5'SS Class:
major
3'SS Sequence:
CCCAGGGCTCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GCCTTCCCATCC
Flanking Amino Acid:
MLAGTRLLHRNL
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1
51.3
39.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
57.6
0.17
1
45.3
41.3
Minor 5ss
34.6
-1.8
3.1
40.8
41.1
Minor BPS
41.1
-0.6
2
47.35
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005654
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005840
24960 - 27490
2531