About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_274822_275775_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
274822 - 275775
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAATA
Flanking Amino Acid:
FAVGEECDFEVGKEKMLPVK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.9
80.9
36.4
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
80
0.94
1.4
88.77
27.5

Associated Gene:

Gene:
BAZ1B
Ensembl Gene ID:
ENSAPLG00000007529
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042007
266140 - 317580
51441
ENSAPLT00000007833
266140 - 316838
50699