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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_292509_294191_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
292509 - 294191
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
EEVKKDYGQGDKRKSTATDG
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
87.7
0.85
0.6
83.7
24.6
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
BAZ1B
Ensembl Gene ID:
ENSAPLG00000007529
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042007
266140 - 317580
51441
ENSAPLT00000007833
266140 - 316838
50699