Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2987834_2989220_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2987834 - 2989220

Intron Length:

1387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATTGCTGCATT

Flanking Amino Acid:

SLVMDVQTQQRFPNNLLFTS

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

46.1

-0.2

2.2

68.36

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004635

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004779

2875275 - 2994745

119471