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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2989304_2990261_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2989304 - 2990261
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
ATCTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
VRIGGQPLGFDECGIVAQIS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.5
37.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.3
0.68
0.8
73.5
30.9
Minor 5ss
34.1
-1.8
3
42.1
44.8
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004635
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004779
2875275 - 2994745
119471