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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_2990357_2994679_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2990357 - 2994679
Intron Length:
4323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
AGAGCCTGACCT
Flanking Amino Acid:
ISTFKFDHALVPEENINGVV
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
48.6
-0
1.9
65.16
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004635
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004779
2875275 - 2994745
119471