Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3007679_3009032_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3007679 - 3009032

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTGATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TGTGCTCTGATG

Flanking Amino Acid:

RMEDQYFPWRVTVPGEVVDV

Intron Amino Acid Position:

483

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

82.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

71.1

0.48

65.5

40.2

Minor 5ss

37.8

-1.4

3.4

49.4

46.6

Minor BPS

47.6

-0.3

1.8

55.42

40.5

Associated Gene:

Gene:

RCC1L

Ensembl Gene ID:

ENSAPLG00000004807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004983

3007601 - 3022270

14670