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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3009119_3010460_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3009119 - 3010460
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTCTACAT
Flanking Amino Acid:
CGLSQFAALTNRGELFVWGK
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.9
0.51
0.8
68.9
30.5
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
49.2
0.02
2
73.49
43.5

Associated Gene:

Gene:
RCC1L
Ensembl Gene ID:
ENSAPLG00000004807
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004983
3007601 - 3022270
14670