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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3011785_3013993_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3011785 - 3013993
Intron Length:
2209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
CAACCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TACTTTGTAATG
Flanking Amino Acid:
QLASVTETTQVSVPRHLPFK
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
69.7
0.44
0.9
62.2
34
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
48.4
-0.2
2
55
41.4

Associated Gene:

Gene:
RCC1L
Ensembl Gene ID:
ENSAPLG00000004807
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004983
3007601 - 3022270
14670