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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3014176_3015115_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3014176 - 3015115
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AAATCTTGATCA
Flanking Amino Acid:
ACGWGADGQTGLGHYNITSV
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
50.5
0.01
1.7
61.05
38.5

Associated Gene:

Gene:
RCC1L
Ensembl Gene ID:
ENSAPLG00000004807
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004983
3007601 - 3022270
14670