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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3017737_3018611_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3017737 - 3018611
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGCATCTTATTA
Flanking Amino Acid:
HSLILTDSEGVFTMGNNSYG
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
51.7
0.05
1.6
60.05
40.4

Associated Gene:

Gene:
RCC1L
Ensembl Gene ID:
ENSAPLG00000004807
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004983
3007601 - 3022270
14670