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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3021222_3021814_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3021222 - 3021814
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTGCCTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTACTGAACA
Flanking Amino Acid:
TPYRLETDGKITSAACGYGF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
45.9
44.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.3
0.46
1
70.8
33.8
Minor 5ss
27.6
-2.6
3.6
37.8
47
Minor BPS
68.6
0.58
1.6
79.24
36

Associated Gene:

Gene:
RCC1L
Ensembl Gene ID:
ENSAPLG00000004807
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004983
3007601 - 3022270
14670