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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3023880_3024504_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3023880 - 3024504
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
GCTTTACCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCTGCTTTACCC
Flanking Amino Acid:
ASLQNKANIISEKNEQEENK
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
69.5
41.3
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
68.7
0.42
0.8
62.3
33.7
Minor 5ss
41.7
-0.9
3.1
63.6
40.6
Minor BPS
59.9
0.29
1.7
69.26
43

Associated Gene:

Gene:
NCF1
Ensembl Gene ID:
ENSAPLG00000005084
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005255
3023761 - 3032762
9002