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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3027949_3028447_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3027949 - 3028447
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
TCTTGCCCACTC
Flanking Amino Acid:
MVDIVEKSESGWWFCQLKNK
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
76.3
0.59
1
69.4
41.7
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
40.4
-0.7
2.3
54.71
43.9

Associated Gene:

Gene:
NCF1
Ensembl Gene ID:
ENSAPLG00000005084
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005255
3023761 - 3032762
9002