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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3028737_3028925_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3028737 - 3028925
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
CTGACCCGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTGCTCTGACC
Flanking Amino Acid:
PDDMSPVTDSQIKKPEVFLL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
60.1
0.23
1
50.9
39.2
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
58.7
0.26
1.8
74.26
36.9

Associated Gene:

Gene:
NCF1
Ensembl Gene ID:
ENSAPLG00000005084
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005255
3023761 - 3032762
9002