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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3030476_3030792_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3030476 - 3030792
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGT
5'SS Class:
major
3'SS Sequence:
CCCTGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCGTCCTCACGG
Flanking Amino Acid:
RRFTEIYEFHKTLKEMFPIE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.3
36.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
75.3
0.57
0.8
68.4
31.9
Minor 5ss
31.4
-2.1
3.3
44.7
43.5
Minor BPS
42.4
-0.7
2.1
42.53
48.6

Associated Gene:

Gene:
NCF1
Ensembl Gene ID:
ENSAPLG00000005084
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005255
3023761 - 3032762
9002