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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3086257_3087240_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3086257 - 3087240
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTCATTTTATT
Flanking Amino Acid:
SVEDFFCFCYGKALGKSTVV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.6
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
28.6
-2.5
3.4
37.6
42.5
Minor BPS
49.6
0.05
1.8
70.01
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028519
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033212
3085453 - 3100445
14993