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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3087376_3099213_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3087376 - 3099213
Intron Length:
11838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
AAACAAACTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTATAAACA
Flanking Amino Acid:
KDFQKDFVKYCVTEEERAAE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
50.8
0.02
1
38.6
38.8
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
52.4
0.07
2
71.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028519
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033212
3085453 - 3100445
14993