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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3126601_3127449_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3126601 - 3127449
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
DDAVKRQGFQENYDARLSRI
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
GTF2IRD1
Ensembl Gene ID:
ENSAPLG00000006811
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044340
3113562 - 3152585
39024
ENSAPLT00000007184
3114176 - 3152585
38410