Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3132694_3133370_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3132694 - 3133370

Intron Length:

677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCTAT

U12 Branch Point Sequence:

CTATGCTGGAGA

Flanking Amino Acid:

KCSVSESCEPGTSGELGGIR

Intron Amino Acid Position:

478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

29.3

Major BPS

0.37

1.3

64.5

42.5

Major PPT

0.59

0.7

74.2

Minor 5ss

26.1

-2.7

2.9

29.9

43.2

Minor BPS

44.1

-0.4

2.2

55.43

43.6

Associated Gene:

Gene:

GTF2IRD1

Ensembl Gene ID:

ENSAPLG00000006811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044340

3113562 - 3152585

39024

ENSAPLT00000007184

3114176 - 3152585

38410