Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3147517_3150438_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3147517 - 3150438

Intron Length:

2922

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGG|GCGGGAAGG

5'SS Class:

major

3'SS Sequence:

TCCAGCAGCGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

TTCTCTCCACCC

Flanking Amino Acid:

DFQKFCREYPGEQDAEAQKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.2

53.8

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

44.2

-0.3

1.7

42.5

37.1

Minor 5ss

15.3

-4

3.4

13.2

28.4

Minor BPS

46.2

-0.3

2.1

62.86

42.9

Associated Gene:

Gene:

GTF2IRD1

Ensembl Gene ID:

ENSAPLG00000006811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044340

3113562 - 3152585

39024

ENSAPLT00000007184

3114176 - 3152585

38410