Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_315101_315703_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

315101 - 315703

Intron Length:

603

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCGTTCGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTCAT

U12 Branch Point Sequence:

TTCCTCCTATCT

Flanking Amino Acid:

LIKYRFSWPFREPVTTEEAE

Intron Amino Acid Position:

1337

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

59.9

0.25

1.3

43.2

Major PPT

73.5

0.53

72.9

37.4

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

49.9

0.07

1.9

73.67

43.1

Associated Gene:

Gene:

BAZ1B

Ensembl Gene ID:

ENSAPLG00000007529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007833

266140 - 316838

50699

ENSAPLT00000042007

266140 - 317580

51441