About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3181062_3184749_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3181062 - 3184749
Intron Length:
3688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCAC
5'SS Class:
major
3'SS Sequence:
TTCTCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TCTTCAGTAAAT
Flanking Amino Acid:
AMRLSSEKAQTVGNSGSANG
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
57.3
42
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
86
0.81
0.7
81.2
29.1
Minor 5ss
29
-2.4
3.6
40.5
46
Minor BPS
51.2
0.12
2.3
78.39
43.5

Associated Gene:

Gene:
CLIP2
Ensembl Gene ID:
ENSAPLG00000010136
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010575
3180972 - 3240248
59277