About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3188350_3191787_R

Intron Information:

Intron Rank:
9
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
3188350 - 3191787
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
ATATTTATTTCAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATTT
Flanking Amino Acid:
EALHPSQHANMIDTNDISEE
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
73.5
38
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.4
0.71
0.9
78.7
38.8
Minor 5ss
79
0.98
2
86.2
30.1
Minor BPS
58.5
0.35
1.7
77.58
39.2

Associated Gene:

Gene:
CLIP2
Ensembl Gene ID:
ENSAPLG00000010136
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010575
3180972 - 3240248
59277