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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3194419_3198731_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3194419 - 3198731
Intron Length:
4313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTGACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTCCCCATGT
Flanking Amino Acid:
EESITKGDLETQTQLEHARI
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
58.9
0.2
1.1
50.9
46.7
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
47.2
-0.1
2.3
77.09
45

Associated Gene:

Gene:
CLIP2
Ensembl Gene ID:
ENSAPLG00000010136
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010575
3180972 - 3240248
59277