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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3201288_3202411_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3201288 - 3202411
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGG
5'SS Class:
major
3'SS Sequence:
TTTTTCACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
IAIMKAQHEQYVTEAEGNLQ
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
54.1
45.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82.6
27.5
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
CLIP2
Ensembl Gene ID:
ENSAPLG00000010136
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010575
3180972 - 3240248
59277