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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3217700_3240136_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3217700 - 3240136
Intron Length:
22437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCCTCACT
Flanking Amino Acid:
AAAVTTGSKEGSPLHKQGTT
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.3
0.48
0.8
64.2
29.9
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
62.7
0.48
2.1
84.58
42.1

Associated Gene:

Gene:
CLIP2
Ensembl Gene ID:
ENSAPLG00000010136
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010575
3180972 - 3240248
59277