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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3279200_3279850_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3279200 - 3279850
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATT
Flanking Amino Acid:
GNEDTVSRLEVFAKEGNVPN
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.8
0.72
0.7
81.3
30.3
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
74.6
0.85
1
82.48
32.6

Associated Gene:

Gene:
RFC2
Ensembl Gene ID:
ENSAPLG00000009389
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009836
3278429 - 3284978
6550